PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn006751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 210aa    MW: 23641.8 Da    PI: 9.6368
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn006751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-094993244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT+ E + + +a + +  +   +W+ +a+ +g g+t++++k ++
       Achn006751 49 GSWTAKENKAFEKALAVFDRDtpdRWHNVAKAVG-GKTAEEVKRHY 93
                     89*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.0446101IPR017884SANT domain
SMARTSM007173.0E-94799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-549103IPR009057Homeodomain-like
PfamPF002495.1E-74993IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-1250104IPR009057Homeodomain-like
CDDcd001674.92E-85093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQLRIKNYRS INKQSHRYGP LSGQDFPYNN FFPTHFSKEM ASMSSRGSGS WTAKENKAFE  60
KALAVFDRDT PDRWHNVAKA VGGKTAEEVK RHYEILVEDV KHIEQGQVPF PNYRTAGKAN  120
SLRAPLWHLH VAILNNEVTK HNGARRLPMT LQNEMDRTDL VSDPVGQDGQ SLLRYQLPFY  180
GLYGFIEIKL SLTESLVLGY TIGGGTLGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-3644117377RADIALIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-36RAD-like 6